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Species belonging to selected taxon:
Arachis duranensis
,
Arachis hypogaea
,
Arachis ipaensis
,
Glycine soja
,
Glycyrrhiza uralensis
,
Lotus japonicus
,
Medicago sativa
,
Phaseolus acutifolius
,
Phaseolus coccineus
,
Pisum sativum
,
Trifolium pratense
,
Cajanus cajan
,
Cicer arietinum
,
Glycine max
,
Vigna unguiculata
,
Medicago truncatula
,
Phaseolus vulgaris
ABOUT THIS RECORD
ID:
MNEST040673
species:
Medicago truncatula
miRNA family:
MIR166
source:
miRBase, original name:
mtr-MIR166f
(
MI0005614
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCTC
miRNA*
GGAATGAGGTTTGTTCCAAGA
mismatches:
4
bulges:
0
View larger
pre-miRNA
TGTTT
GGAATGAGGTTTGTTCCAAGA
TCATCACACATCATGTTTCTTCTTCCCTTTCAATAATTCTTGATTAATTTATGTTCATACATCTATATATATAT
CTATATATATTATCAAGTCATTACATGCATGGGATGAGATATTGAGAGTGATC
TCGGACCAGGCTTCATTCCTC
ACACC
dot-bracket secondary structure
(((..
(((((((((((((.(((.(((
((((......(((((((((....((((...((.((((.((((((......((((....)))).((((((((...
.))))))))..))))))..))))..))...)))).)))))).)))..))))))
).))).)))))))))))))..
)))..
SIMILARITIES
miRBase
tcc-MIR166c
:
0.0000000002
PMRD
mtr-miR166c
:
4e-51
microPC
miR166
:
0.0000006
UniProt
no hits
RFAM
mir-166: 1e-54
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Bonnet E,
Unpublished (2007).
,