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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040695
species: Medicago truncatula
miRNA family: MIR171_1
source: miRBase, original name: mtr-MIR171 (MI0001753)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGTCGTGCCAATATC

miRNA*
 TGTTGGCTTGTCTCAATCAAA

mismatches: 2
bulges: 0
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pre-miRNA
 TGAATTCCCCTCCGCTTTTTGATGTTGGCTTGTCTCAATCAAATCAAAGTTCTTGAAATTTGAGTTCTTTAGTCTGATTGAGTCGTGCCAATATCATATT
AAGCGATAAAAGTC

dot-bracket secondary structure
............(((((..((((((((((.((.((((((((.((.((((..((..(...)..))..)))).)).)))))))).)).))))))))))....
))))).........


SIMILARITIES
miRBase tcc-MIR171g: 0.000000006

PMRD vvi-miR171a: 0.00000009

microPC miR171: 0.000006		UniProt no hits

RFAM MIR171_1: 3e-17

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
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references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"



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