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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040703
species: Medicago truncatula
miRNA family: MIR159
source: miRBase, original name: mtr-MIR319 (MI0001751)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGGACTGAAGGGAGCTCCC

miRNA*
GAGCTTCCTTCAGTCCACTC

mismatches: 2
bulges: 0

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pre-miRNA
ATTATTAGAAATAGATGAAGAGAGCTTCCTTCAGTCCACTCATGGAAGGGTAAGGGGTTTGAATTACCTGCTGACTCATTGATTCAAACACAATAGACAA
TTATGGGGTTATGCTATTGTGAATGTGTGAATGATGCAGGAGGTGAATTTCTTCCTTTTCTTCTTTGCTTGGACTGAAGGGAGCTCCCTTTTTCTATTTA
TAAATTA


dot-bracket secondary structure
....(((.(((((((.((((.(((((((((((((((((..((.(((((((.((((((...((.((((((.(((..(((((.((.((..((((((((..((
((....))))...))))))))..)).)).)))))..))).)))))).))..))))))))))))).))..))))))))))))))))).)))).))))))).
)))....



SIMILARITIES
miRBase vvi-MIR319f: 4e-36

PMRD vvi-miR319f: 4e-36

microPC miR319: 0.000003
UniProt no hits

RFAM MIR159: 1e-104

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454

references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"




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