ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR395
source: miRBase, original name: mtr-MIR395b (MI0001747)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAAGTATTTGGGGGAACTC miRNA* GTTCCTCTGAATGCTTCAAAC mismatches: 3 bulges: 0 |
pre-miRNA
TACTTGTTGATTTTCTCTTGGAGTTCCTCTGAATGCTTCAAACATGAGACAATCTTGATAGAAATTATGGATAGTTCTTGTTCAATGAAGTATTTGGGGG
AACTCTTGGAATTGAATCAACATA
dot-bracket secondary structure
....(((((((((..(((.((((((((((..(((((((((((((.(((.(.((((((((....)))).)))).)))).))))...)))))))))..))))
)))))).)))...)))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TACTTGTTGATTTTCTCTTGGAGTTCCTCTGAATGCTTCAAACATGAGACAATCTTGATAGAAATTATGGATAGTTCTTGTTCAATGAAGTATTTGGGGG
AACTCTTGGAATTGAATCAACATA
dot-bracket secondary structure
....(((((((((..(((.((((((((((..(((((((((((((.(((.(.((((((((....)))).)))).)))).))))...)))))))))..))))
)))))).)))...)))))))))..
SIMILARITIES| miRBase mtr-MIR395j: 5e-19 PMRD mtr-miR395b: 3e-66 microPC no hits | UniProt no hits RFAM mir-395: 1e-53 |
Identical with: mtr-miR395b from PMRD (MNEST048733) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
