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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040726
species: Medicago truncatula
miRNA family: MIR396
source: miRBase, original name: mtr-MIR396a (MI0005621)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCACAGCTTTCTTGAACTT

miRNA*
 GCTCAAGAAAGCTGTGGGAGA

mismatches: 1
bulges: 0
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pre-miRNA
 TGCTTTTCCACAGCTTTCTTGAACTTCTTTCGTATCTTAAATCTGTTTTCAAGATTAAAAGTCCTAGAAGCTCAAGAAAGCTGTGGGAGAATA

dot-bracket secondary structure
...(((((((((((((((((((.(((((.......(((.(((((.......)))))..)))....))))).)))))))))))))))))))...


SIMILARITIES
miRBase gma-MIR396d: 0.00000000000008

PMRD mtr-miR396a: 7e-48

microPC miR396: 0.00000007		UniProt no hits

RFAM MIR396: 1e-46

Identical with: mtr-miR396a from PMRD (MNEST048748)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454

references
[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"



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