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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040736
species: Medicago truncatula
miRNA family: MIR399
source: miRBase, original name: mtr-MIR399f (MI0005587)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGATTTGCCCAG

miRNA*
GGGTGAGTTCTCCATTGGCAGG

mismatches: 5
bulges: 1

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pre-miRNA
TTACAGGGTGAGTTCTCCATTGGCAGGTAGCTAGTCACTATATGATATGCATTGCAATTCATCTCTTAGTGTGCAATCTGCCAAAGGAGATTTGCCCAGC
GATT


dot-bracket secondary structure
.....(((..(((.((((.(((((((((.((....(((((.((((..(((...)))..))))....))))).)).))))))))).)))))))..)))...
....



SIMILARITIES
miRBase mtr-MIR399a: 3e-47

PMRD mtr-miR399a: 3e-47

microPC miR399: 0.00000000002
UniProt no hits

RFAM mir-399: 1e-50

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Bonnet E, Unpublished (2007).,




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