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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040749
species: Medicago truncatula
miRNA family: MIR1509
source: miRBase, original name: mtr-MIR1509 (MI0010543)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTAATCTAGGAAAATACGGTG

miRNA*
CCGGATTTCCTTGATTAAAG

mismatches: 3
bulges: 1

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pre-miRNA
CCCGGCCTCTCTCTTGCCTCATAGCTAGTTAGGGTTTTCGTTGCTGTCTCGTGTTTTCTTTTGATCCATTCAATTTTTTTAATCTAGGAAAATACGGTGG
AGAGGGTTTTTCTTTTTATTGTTTGAGATTGATATCTCTCGTCTTCTCTACCGGATTTCCTTGATTAAAGAAATTTACTGGTTCATTATTATTTTTTAGC
TATGATGACAATGTGTATCCCAGCTCATTATGAGGCCTTTTTGTAAGGTCTGGG


dot-bracket secondary structure
((((((((..(....(((((((((..((((.((((...(((((..(((..((.........(((.(((.(.(((((((((((((.((((((...((((((
((((((.....(........)...(((((....)))))...))))))))))))..)))))).))))))))))))).).))).))).............))
...)))..)))))...)))).))))..)))))))))......)..))).)))))



SIMILARITIES
miRBase mtr-MIR1509b: 0.0002

PMRD mtr-miR1509: 6e-131

microPC no hits
UniProt no hits

RFAM snoR69Y: 2e-26

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Northern, Solexa

references

[1] Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T, BMC Genomics. 9:593(2008)., "High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families"




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