ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR2088
source: miRBase, original name: mtr-MIR2088a (MI0010545)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGCCTAGATTACATTGGAC miRNA* CCAATGTAATCTAGGTCTAC mismatches: 0 bulges: 0 |
pre-miRNA
TCTCTGTATCTCGAAGTAGACGGCGGCTTAACCGATGTAGGCCTAGATTACATTGGACAAAACAGTCCAAACTTGAGATGGTTACTTCTTGGTCCAATGT
AATCTAGGTCTACATCTGTTAAGTCTCTAAAGTATTCTGAAAGAGA
dot-bracket secondary structure
(((((...((..(((......((.((((((((.(((((((((((((((((((((((((.....(((...((((......))))))).....)))))))))
)))))))))))))))).)))))))).))......))).)).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, Solexa, 454
references
[1] Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T, BMC Genomics. 9:593(2008)., "High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families"
[2] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
TCTCTGTATCTCGAAGTAGACGGCGGCTTAACCGATGTAGGCCTAGATTACATTGGACAAAACAGTCCAAACTTGAGATGGTTACTTCTTGGTCCAATGT
AATCTAGGTCTACATCTGTTAAGTCTCTAAAGTATTCTGAAAGAGA
dot-bracket secondary structure
(((((...((..(((......((.((((((((.(((((((((((((((((((((((((.....(((...((((......))))))).....)))))))))
)))))))))))))))).)))))))).))......))).)).)))))
SIMILARITIES| miRBase mtr-MIR2088b: 9e-61 PMRD mtr-miR2088: 3e-79 microPC no hits | UniProt sp|O04197|COI1_ARATH: 0.00007 RFAM no hits |
Identical with: mtr-MIR2088b from miRBase (MNEST040756) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, Solexa, 454
references
[1] Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T, BMC Genomics. 9:593(2008)., "High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families"
[2] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
