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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040756
species: Medicago truncatula
miRNA family: MIR2088
source: miRBase, original name: mtr-MIR2088b (MI0012051)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCAATGTAATCTAGGTCTAC

miRNA*
 AGGCCTAGATTACATTGGACA

mismatches: 0
bulges: 0
View larger
pre-miRNA
 GTAGACGGCGGCTTAACCGATGTAGGCCTAGATTACATTGGACAAAACAGTCCAAACTTGAGATGGTTACTTCTTGGTCCAATGTAATCTAGGTCTACAT
CTGTTAAGTCTCTAA

dot-bracket secondary structure
......((.((((((((.(((((((((((((((((((((((((.....(((...((((......))))))).....))))))))))))))))))))))))
).)))))))).))..


SIMILARITIES
miRBase mtr-MIR2088a: 7e-61

PMRD mtr-miR2088: 7e-61

microPC no hits		UniProt sp|O04197|COI1_ARATH: 0.00006

RFAM no hits

Identical with: mtr-MIR2088a from miRBase (MNEST040755)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"



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