miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST008370
species: Medicago truncatula
miRNA family: MIRf469
source: miRNEST

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCTGTAATCCTAGCACTTTGG

miRNA*
 AAGGTGGGAGGATTGCTTGAG

mismatches: 5
bulges: 0
View larger
pre-miRNA
 AGCTTGCATAGTAAAACCCCAGTCTCTACAGAAAATTGAAAAACTAGCAGGCGTGGTGGTGAACACCTGTAGTCTCAGTTACTAGGGGAGCTAAGGTGGG
AGGATTGCTTGAGCCTGGGAGGTCAAGGCTGCAGTGAGCTATGACTGCACCACTGCACTCCAGCCTGGGAGACAGAGCAAGACCCTGTCCCAAAAAAATA
AACAAATAAAATAATAATAAATAAAATAACCAGTCCGGGTGCAGTGGCTCACACCTGTAATCCTAGCACTTTGGGAGGACGATGTGGGTGGATCACTTGA
GCCCAGGAGTTCAAGACTAGCCTGGGCAACATAGGGAGACCCAATCTCTACAAAAAATACAAA

dot-bracket secondary structure
.((((((.((((..........(((....)))..........))))))))))..((((.....)))).....((((.........)))).((((((((..
((((((((.((((((.((..(((((.((((......)))).)))))...))(((((((((..(((((.....))).))..(((.................
................................))).))))))))))))))).....))))))))..))))))))..(((.(((.(((((...((.((((.
(((((((((((...))))..)))))))....)))))).)))))))))))..............


SIMILARITIES
miRBase hsa-mir-1273g: 0.0000000000003

PMRD ptc-miRf10804-akr: 0.00000000008

microPC no hits		UniProt sp|Q96MD7|CI085_HUMAN: 0.0000000003

RFAM Metazoa_SRP: 5e-28		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




Liczniki na strone;