miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST008412
species: Medicago truncatula
miRNA family: MIR1439
source: miRNEST

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATTTGGGACGGAGGGAGTAAT

miRNA*
 CTACTCCCTCCGTCCTAAATTG

mismatches: 0
bulges: 1
View larger
pre-miRNA
 TAAAAGTTGTGTCTACTCCCTCCGTCCTAAATTGTATGACGTTTTGAGCATTTCACACATATTAAGAAATGCAATTAATATTGTATGGAAAAAAGATATT
ATGAGTTGTTTTACAAAATTGTCCTTAATAAATAACATGAGAAAGATAAATGAAAGAATTGAAAGAAAAGATAGTAATAAATAGTTAAGGTTATAATAGA
AAAAATAACATTAATGTTGCATTGGTATTGTAAAACGACATATAATTTGGGACATTTTTTTTCTTCCTAAAGCGACATACAATTTGGGACGGAGGGAGTA
ATATATTAGGA

dot-bracket secondary structure
.......(((((.(((((((((((((((((((((((((.(((((((.(((((((...........)))))))...((......)).((((((((((((((
(((.((((((((((((.((((((.((........................................)).))))))...((...(((((.(((((......
....))))).))))).))((....)).)))))))))))).)))))).......)))))))))))...))))))).)))))))))))))))))))))))))
)))))......


SIMILARITIES
miRBase no hits

PMRD no hits

microPC miR1436: 0.00002		UniProt no hits

RFAM MIR1122: 0.0003		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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