miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Arachis duranensis
,
Arachis hypogaea
,
Arachis ipaensis
,
Glycine soja
,
Glycyrrhiza uralensis
,
Lotus japonicus
,
Medicago sativa
,
Phaseolus acutifolius
,
Phaseolus coccineus
,
Pisum sativum
,
Trifolium pratense
,
Cajanus cajan
,
Cicer arietinum
,
Glycine max
,
Vigna unguiculata
,
Medicago truncatula
,
Phaseolus vulgaris
ABOUT THIS RECORD
ID:
MNEST008426
species:
Medicago truncatula
miRNA family:
MIR1525
source:
miRNEST
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGAGTTAATTAAGTTTTTAGT
miRNA*
TAAAAGCTTATGGACTCGTA
mismatches:
5
bulges:
1
View larger
pre-miRNA
ATAAAACATAATATTTAATTTTATTGAATAA
AGAGTTAATTAAGTTTTTAGT
CCCTATAAATATTCACAGTTTTGTTTTTAGTCCCTACAAAATAAAATC
ACACTTTTTAGTCCCTGTGACATTTTCCTTAAGCATTTTAGGGACCAAAAATGTTGATGAAAATTTTTAACAGGGATTAAAAATACTGACGAAAATTTTT
GACAGGGATTAAAAATACAACGTTTTTTTAATTGTGAAGTAAACCAAAACAACTGCAAGTGAATATTTAAGTAGTGTGATCGCAAGGTCTATGTTTCTGA
CACGCACGCACGCGCGCACTTGTACATA
TAAAAGCTTATGGACTCGTA
AACTCATCATAGACTCGAGGGGGGGCCC
dot-bracket secondary structure
...........((((((((...)))))))).
.(((((...((((((((((..
.....(((((((((((.(((.((((((((((((((.(((((.....((
(...((((((((((((((((((((((((((((.....)))))))....)))))))(((....)))....))))))))))))))...))).......))))
)..)))))))))))))).)))....((.((.((((.............)))).)).))))))))))))).(((((((((((....))))..((((...))
))(((......))).)))))...))...
))))))))))..)))))...
..(((.((........))..))).....
SIMILARITIES
miRBase
gma-MIR1525
:
6e-61
PMRD
gma-miR1525
:
6e-61
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
degradome data
download this record