ABOUT THIS RECORDspecies: Gerbera hybrid cultivar
miRNA family: MIRf129
source: miRNEST
Taxonomy by NCBI:
Gerbera hybrid cultivar Gerbera Mutisieae Mutisioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGGAGGGATGCCTTCCTTA miRNA* AGGGGGGACTCCTTCTGGATA mismatches: 3 bulges: 0 |
pre-miRNA
AGGACAAGGGGGAGGGGGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTACGTCCATCCTCAAGCTGCTTCCCTGCAAAGATAAGCCTCTGCTGGTCCG
GAGGGATGCCTTCCTTATCCTGGATC
dot-bracket secondary structure
......((((.((((((((..(((((((((((...((((..(((.(((((......)))))...)))((((..((....))..))))..))))..)))))
))))))..)))))))).)))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGGACAAGGGGGAGGGGGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTACGTCCATCCTCAAGCTGCTTCCCTGCAAAGATAAGCCTCTGCTGGTCCG
GAGGGATGCCTTCCTTATCCTGGATC
dot-bracket secondary structure
......((((.((((((((..(((((((((((...((((..(((.(((((......)))))...)))((((..((....))..))))..))))..)))))
))))))..)))))))).)))).....
SIMILARITIES| miRBase no hits PMRD ath-miRf10060-akr: 3e-23 microPC no hits | UniProt sp|Q9FHQ6|UBQ9_ARATH: 0.000000000000007 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
