miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Peromyscus maniculatus bairdii, Oryctolagus cuniculus, Cavia porcellus, Peromyscus polionotus subgriseus



ABOUT THIS RECORD

ID: MNEST004986
species: Mus musculus
miRNA family: mir-1195
source: miRNEST

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGTTCGAGGCCAGCCTGGT

miRNA*
CAGGACAGCCAGGGCTACAGA

mismatches: 4
bulges: 2

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pre-miRNA
AGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTGCCAGGACAGCCAGGGCTACAGAGAGAAACCCTGTCTCCAA

dot-bracket secondary structure
.....((((((((....(((((((((((..(((...((((((((........)).))))))...))).))))).)))))).....))))))))...


SIMILARITIES
miRBase mmu-mir-3470b: 4e-25

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-1937: 0.00000002
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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