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Species belonging to selected taxon:

Bicyclus anynana, Bombyx mori, Choristoneura fumiferana, Spodoptera frugiperda, Heliothis virescens, Antheraea assama, Spodoptera littoralis, Samia cynthia ricini, Danaus plexippus, Papilio xuthus, Ostrinia nubilalis, Trichoplusia ni, Epiphyas postvittana



ABOUT THIS RECORD

ID: MNEST035600
species: Bombyx mori
miRNA family: mir-2733
source: miRBase, original name: bmo-mir-2733e-3 (MI0015937)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCACTGGGAATGTAATAGCTAT

miRNA*
AGCTATTACTTCTCCAGAAGACA

mismatches: 1
bulges: 3

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pre-miRNA
TTTGCTGGACTGTCTATAATGTCTTTCAACAATAGCTATTACTTCTCCAGAAGACATTCACATTCTGTCACTGGGAATGTAATAGCTATTTCCAAAATT

dot-bracket secondary structure
.(((..((((..........))))..))).(((((((((((((((.((((..((((.........)))).))))))).)))))))))))).........


SIMILARITIES
miRBase bmo-mir-2733e-2: 2e-51

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: bmo-mir-2733e-2 from miRBase (MNEST035599)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence

references

[1] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"
[2] Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R, BMC Genomics. 11:52(2010)., "Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development"




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