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Species belonging to selected taxon:

Macaca fascicularis, Papio anubis, Homo sapiens, Pongo abelii, Macaca nemestrina, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST028175
species: Macaca nemestrina
miRNA family: mir-17
source: miRBase, original name: mne-mir-18 (MI0003020)

Taxonomy by NCBI:
Macaca nemestrina Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAAGGTGCATCTAGTGCAGATA

miRNA*
CTGCCCTAAGTGCTCCTTCTG

mismatches: 5
bulges: 1

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pre-miRNA
TGTTCTAAGGTGCATCTAGTGCAGATAGTGAAGTAGATTAGCATCTACTGCCCTAAGTGCTCCTTCTGGCA

dot-bracket secondary structure
.(((..((((.(((..(((.((((.(((((..(.....)..)).))))))).)))..))).))))..))).


SIMILARITIES
miRBase cfa-mir-18a: 7e-35

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ssc-mir-18a from miRBase (MNEST033917)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"




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