miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST003143
species: Helianthus annuus
miRNA family: MIRf263
source: miRNEST

Taxonomy by NCBI:
Helianthus annuus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAGAAGGAGGAACAACCCGAA

miRNA*
 TGGGGGTACTCCTTCTCCG

mismatches: 3
bulges: 2
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pre-miRNA
 AATTCGAAAAAGAGAAGGAGGAACAACCCGAAGGATTAAAACAAACTCGACCCATCATATATAGGTTGGATCGAAAAATTCTAGAATTTGCTTAGAAACC
ATCTGGCCTGGAAGCAAAGACCATGATACATTGAACTAGAGGAACGAGGTCAAATGCGATGATACGGATCCATGCTTGGGGGTACTCCTTCTCCGCATTC
AGG

dot-bracket secondary structure
.....(((...(((((((((..((..(((((.(((((....((...((((.(((............))).))))....((((((.....(((.(((....
.))))))))))))(((..((((.((.....((......))....)).))))...)))..)).....)))))....))))).)).)))))))))....)))
...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|P08705|RBS_HELAN: 0.0000001

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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