miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000879
species: Helianthus petiolaris
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Helianthus petiolaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCC

miRNA*
AATGTTGTCTGGCTCGAGA

mismatches: 3
bulges: 0

View larger
pre-miRNA
TTCTTTTGTGGGGAATGTTGTCTGGCTCGAGACCACAAGAAAGCTTCAATCTTTATAATCTTTATGTTACATAATCACATAATTGATCAATCTTTGTTGA
TCAATGATTAAAGATTAGAATCTTGTGTTGTCGGACCAGGCTTCATTCCCCTCATGTGT


dot-bracket secondary structure
......((.((((((((..((((((.((((...(((((((....(((((((((((..(((.((((((.........))))))(((((((((....)))))
)))).))))))))))).))))))))))...)))).))))))..)))))))).)).....



SIMILARITIES
miRBase ctr-MIR166: 0.000000008

PMRD aqc-miR166e: 0.000000008

microPC miR166: 8e-77
UniProt no hits

RFAM mir-166: 0.0000006
most similar mature miRNAs

Identical with: miR166 from microPC (MNEST044803)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;