miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST045669
species: Helianthus tuberosus
source: microPC, original name: miR159

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCT

miRNA*
AGCTCCTTAAAGTCCAATAG

mismatches: 3
bulges: 0

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pre-miRNA
AGAGCTCCTTAAAGTCCAATAGAAGATCTGAGTGAGAACATAGAGCTGCTAGTTTATGGATCCCTCAAGTCCTATCTTTGTTGATGTATAGGCTTTGTGG
CTTGCATACACTTGGAGCTTTATTACCCTCCTTATGATCCTTTTTTGGATTGAAGGGAGCTCT


dot-bracket secondary structure
((((((((((..(((((((.(((.((((((((.(((...((((((((.(.(((.((((.(..((.((((.((((((.........).))))).)))).))
..).)))).))).).))))))))....))))))).)))).))).)))))))..))))))))))



SIMILARITIES
miRBase sly-MIR159: 0.0000005

PMRD sly-miR159: 0.0000005

microPC miR159: 2e-89
UniProt no hits

RFAM MIR159: 0.00001

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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