miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000892
species: Helianthus tuberosus
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATTTCTTCATCATCATCATCG

miRNA*
 CTGATTATGGGAGGTATAG

mismatches: 3
bulges: 2
View larger
pre-miRNA
 TTTATATCCAGATTTCTTCATCATCATCATCGCCTGCAACTAAACCACAACCGATCAACATTCTTTCTTTCTTACTCCATGACAATAGTGAAAGGACCTG
CTTCCAACCTAAATCTTTCCGAAGCTGACGATAAGAACTTGGAGTTTTTGATAGAAGCTTTCGGTTCAATGATATCTCCCGATGACATGGCGTCCGCGTA
CTGCCAAGCGGGATACGATCTAAATAAAGCAAGTGATATACTATATGCTATGCTCGGAAGCTCTTCCAACAACGACAAATACATACCAACAGAAGATTCG
ACTAGAGCACCTGCATCATCAGTCGGTGTAACCGTCGGTACAGTTTCTGGTGTTAACGGTGCTTACTATCCAACATCAAGAACTTCAACCAACGAACCTG
CAACGGTTCTTTCTAGAGCTAAGCTCAGAACCTCTGGTGTATCAGTGGGTACGGTATCGGGTATAATCGGTGCTGATTATGGGAGGTATAGGGCTAATG

dot-bracket secondary structure
....((.((..((..((((.((((.((((.((((......((.(((..((((((......((((.((......((((((.......(((..........(
((((................)))))...........)))))))))....)).))))....))))))...(((((((.((((.(((..(((((........
.))))).(((((......((((..((.((((.(((......))).)))).)).(((((...(((((.........................)))))))))
).))))...)))))..((((((.((((...))))..(((..(((((.(((((((...((((.....)))).))))))).)))))...)))...(((((..
....))))).((((.((((...))))))))...))))))..))).))))...)))))))))).))...)))).)))).)))))))).))..)).))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




Liczniki na strone;