miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST045111
species: Helianthus tuberosus
source: microPC, original name: miR319

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTC

miRNA*
GCTCCTTAAAGTCCAATAG

mismatches: 3
bulges: 0

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pre-miRNA
GAGCTCCTTAAAGTCCAATAGAAGATCTGAGTGAGAACATAGAGCTGCTAGTTTATGGATCCCTCAAGTCCTATCTTTGTTGATGTATAGGCTTTGTGGC
TTGCATACACTTGGAGCTTTATTACCCTCCTTATGATCCTTTTTTGGATTGAAGGGAGCTC


dot-bracket secondary structure
(((((((((..(((((((.(((.((((((((.(((...((((((((.(.(((.((((.(..((.((((.((((((.........).))))).)))).)).
.).)))).))).).))))))))....))))))).)))).))).)))))))..)))))))))



SIMILARITIES
miRBase sly-MIR159: 0.000002

PMRD sly-miR159: 0.000002

microPC miR319: 4e-88
UniProt no hits

RFAM MIR159: 0.00004

Identical with: miR159 from microPC (MNEST045888)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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