miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST045901
species: Helianthus tuberosus
miRNA family: MIR162
source: microPC, original name: miR162

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCAG

miRNA*
GGATTCAGCGGTTCATCGATC

mismatches: 3
bulges: 0

View larger
pre-miRNA
CTGGATTCAGCGGTTCATCGATCTGTTCCATAATCCTAATGATTGAATTTCATACGACGATTGAGAGAGAGATACGGGAAAAGGAATCGATCGATAAACC
TCTGCATCCAG


dot-bracket secondary structure
((((((.(((.((((.(((((((.(((((....((((....(((...(((((.........)))))....)))..))))...))))).))))))).))))
.))).))))))



SIMILARITIES
miRBase sbi-MIR162: 0.000000001

PMRD sly-miR162: 0.000000001

microPC miR162: 3e-57
UniProt no hits

RFAM MIR162_2: 0.00000003

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record





Liczniki na strone;