miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000893
species: Helianthus tuberosus
miRNA family: MIRf1178
source: miRNEST

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACCTCCATCGCCATCGCCATC

miRNA*
AGGAGATGGCGAGAGAAGGTTG

mismatches: 4
bulges: 1

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pre-miRNA
GGAGGGGTAAATTCAGGTTGTCCAACATCAGAATCTAAAAAGTACCGAGGAAGGAGAAGTTGAAGGAGATGGCGAGAGAAGGTTGACTTGCCGCTGTTTT
TGGGGCCGCATATGAAGGTCGTTATATCACCACCAGAAGCAGAAGCTATGGGTGGCGGCTGCTTCGGACCACTCTTCTGGTATATATGCTTCCACCTCCA
TCGCCATCGCCATC
GCCATTCTTGTGTCTTCTTGCTTTTGTTAGGGATGGGGTGTTGGTTGCGCTTGGGTATGG


dot-bracket secondary structure
..........((((((((...((((((((...((((.(((((((..(((((..(((((..(((.((.((((((((..((.(((.((...(((.((.....
.))))).(((((((..(((.((......)).))).(((((((..((((....))))..)))))))..((((......)))).))))))).)).)))))..
)))))))).)).))
)...)))))...))))).))))))).....))))..))))))))....))))))))....



SIMILARITIES
miRBase no hits

PMRD osa-miRf12002-akr: 0.0000009

microPC no hits
UniProt sp|Q8VYP6|NOL9_ARATH: 0.00000000008

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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