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Species belonging to selected taxon:
Helianthus argophyllus
,
Helianthus ciliaris
,
Helianthus exilis
,
Helianthus paradoxus
,
Helianthus petiolaris
,
Helianthus tuberosus
,
Helianthus annuus
ABOUT THIS RECORD
ID:
MNEST000893
species:
Helianthus tuberosus
miRNA family:
MIRf1178
source:
miRNEST
Taxonomy by NCBI:
Helianthus tuberosus
Helianthus
Heliantheae
Heliantheae alliance
Asteroideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACCTCCATCGCCATCGCCATC
miRNA*
AGGAGATGGCGAGAGAAGGTTG
mismatches:
4
bulges:
1
View larger
pre-miRNA
GGAGGGGTAAATTCAGGTTGTCCAACATCAGAATCTAAAAAGTACCGAGGAAGGAGAAGTTGA
AGGAGATGGCGAGAGAAGGTTG
ACTTGCCGCTGTTTT
TGGGGCCGCATATGAAGGTCGTTATATCACCACCAGAAGCAGAAGCTATGGGTGGCGGCTGCTTCGGACCACTCTTCTGGTATATATGCTTCC
ACCTCCA
TCGCCATCGCCATC
GCCATTCTTGTGTCTTCTTGCTTTTGTTAGGGATGGGGTGTTGGTTGCGCTTGGGTATGG
dot-bracket secondary structure
..........((((((((...((((((((...((((.(((((((..(((((..(((((..(((
.((.((((((((..((.(((.(
(...(((.((.....
.))))).(((((((..(((.((......)).))).(((((((..((((....))))..)))))))..((((......)))).))))))).)).
)))))..
)))))))).)).))
)...)))))...))))).))))))).....))))..))))))))....))))))))....
SIMILARITIES
miRBase
no hits
PMRD
osa-miRf12002-akr
:
0.0000009
microPC
no hits
UniProt
sp|Q8VYP6|NOL9_ARATH: 0.00000000008
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record