miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000907
species: Helianthus tuberosus
miRNA family: MIR162
source: miRNEST

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGATAAACCTCTGCATCCA

miRNA*
 GATTCAGCGGTTCATCGATC

mismatches: 3
bulges: 0
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pre-miRNA
 TTATTGTCATTTGTGTTCGGTAGAGGATCACTGGATTCAGCGGTTCATCGATCTGTTCCATAATCCTAATGATTGAATTTCATACGACGATTGAGAGAGA
GATACGGGAAAAGGAATCGATCGATAAACCTCTGCATCCAGTGTTCTTCCTGCTCAGCACGATCTTGTTT

dot-bracket secondary structure
.......((.(((((((.(((((((((.((((((((.(((.((((.(((((((.(((((....((((....(((...(((((.........)))))....
)))..))))...))))).))))))).)))).))).)))))))).)))).))))).)))))))...))...


SIMILARITIES
miRBase osa-MIR162a: 0.0000000006

PMRD osa-miR162a: 0.0000000006

microPC miR162: 3e-58		UniProt no hits

RFAM MIR162_2: 0.00000001		most similar mature miRNAs

Identical with: miR162 from microPC (MNEST046457)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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