miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Acyrthosiphon pisum, Aphis gossypii, Nilaparvata lugens, Myzus persicae, Peregrinus maidis, Rhodnius prolixus



ABOUT THIS RECORD

ID: MNEST035067
species: Acyrthosiphon pisum
miRNA family: mir-190
source: miRBase, original name: api-mir-190 (MI0013353)

Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGATATGTTTGATATTCTTGGTTG

miRNA*
ACCGAGAATCGGACATATTTTA

mismatches: 0
bulges: 2

View larger
pre-miRNA
TTCGTGAGATATGTTTGATATTCTTGGTTGTTATATTTGAAACCGACCGAGAATCGGACATATTTTAC

dot-bracket secondary structure
...((((((((((((((((..(((((((((.............)))))))))))))))))))))))))


SIMILARITIES
miRBase aae-mir-190: 0.00000000005

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-190: 7e-32

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Sathyamurthy G, Swamy NR, J. Comp. Intell. Bioinf. 2:109-119(2009)., "Computational Identification of MicroRNA Homologs from Acyrthosiphon pisum (Pea Aphid)"
[2] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"




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