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Species belonging to selected taxon:

Hordeum vulgare, Hordeum vulgare subsp. spontaneum



ABOUT THIS RECORD

ID: MNEST001073
species: Hordeum vulgare
miRNA family: MIR1439
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTTGGAACGGAGGGAGTATA

miRNA*
TACTCCCTCCGTCCCAAAATA

mismatches: 2
bulges: 0

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pre-miRNA
CGTAGAGTAGTACTCCCTCCGTCCCAAAATAAGTGTCACAACTTTGTACTAGCTCTAGTACAAAGTTGTACTAAGCTTGAGTCACTTATTTTGGAACGGA
GGGAGTATA
ATAGAGT


dot-bracket secondary structure
......((.(((((((((((((.((((((((((((..((((((((((((((....))))))))))))))(((.......))))))))))))))).)))))
)))))))).
)).....



SIMILARITIES
miRBase osa-MIR1862c: 0.000006

PMRD hpr-miR1120: 0.000000001

microPC miR1439: 8e-36
UniProt no hits

RFAM MIR1122: 4e-35
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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