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Species belonging to selected taxon:
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
ABOUT THIS RECORD
ID:
MNEST001097
species:
Hordeum vulgare
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TACTCCCTCCGTTCCTAAATA
miRNA*
TTTAGGAACGGAGGGAGTACG
mismatches:
0
bulges:
0
View larger
pre-miRNA
GTCGAAAATTATTGTCAGTGATG
TACTCCCTCCGTTCCTAAATA
TAAGTCTTTTAAGAGATTTCACTAAGAGACTACATACAAAACAAAATGAGTGAATC
TATACTTTAAAGTATGTCTAAATACATCAGTATGTAGTCCTATAATGAAACCTCTAAAAAAAAGACTTATA
TTTAGGAACGGAGGGAGTACG
ATGTATGC
ATGGTGCGATGT
dot-bracket secondary structure
((((...(((((.((..(((.((
(((((((((((((((((((((
((((((((((.((((.(((((.((((.((((((((((.........((((((....
((((((....))))))......))).))))))))))))))).)).))))).))))....))))))))))))
)))))))))))))))))))))
...)))))
))))).))))..
SIMILARITIES
miRBase
tae-MIR1122
:
3e-18
PMRD
tae-miR1122
:
3e-18
microPC
miR1436
:
2e-35
UniProt
no hits
RFAM
MIR1122: 4e-30
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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