miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Hordeum vulgare, Hordeum vulgare subsp. spontaneum



ABOUT THIS RECORD

ID: MNEST001135
species: Hordeum vulgare
miRNA family: MIR1120
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACTCCCTCCGTCCTAAAATAA

miRNA*
 ATTTTGGGAGGGAGGGAGTAC

mismatches: 1
bulges: 0
View larger
pre-miRNA
 GGTTGGTACTCCCTCCGTCCTAAAATAAGTGTCTTACGGTTAGTACAATTNTATACTAGAGCTAGTATAAAGTTGAGACAGTTATTTTGGGAGGGAGGGA
GTACTTTG

dot-bracket secondary structure
....((((((((((((.(((((((((((.((((((((.....)))(((((.(((((((....))))))).)))))))))).))))))))))).)))))))
)))))...


SIMILARITIES
miRBase far-MIR1122: 0.0003

PMRD hpr-miR1120: 0.000000001

microPC miR1439: 3e-29		UniProt no hits

RFAM MIR1122: 5e-28		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record




Liczniki na strone;