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Species belonging to selected taxon:

Hordeum vulgare, Hordeum vulgare subsp. spontaneum



ABOUT THIS RECORD

ID: MNEST000947
species: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTCCGTTCCTAAATATAAGTT

miRNA*
CTTATATTTAGAAACGGAGGG

mismatches: 1
bulges: 0

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pre-miRNA
ACAAAGTTAATAATATACTCCCTCCGTTCCTAAATATAAGTTTTTAAAAAGGTTTCATTAACGGACTACATACAGATGTATATAGACACACTTTAGAGTG
TAGATTCATTCATTTTGCTTCATATGTAGACTTCTAATGAAATATCTTAAAAGACTTATATTTAGAAACGGAGGGAGTAGCATACTTAGGTAC


dot-bracket secondary structure
((.((((........(((((((((((((.((((((((((((((((.((...(((((((((..((.(((((((..((.(((...((..(((((....))))
).((.....)).)).))).)).))))))).))..)))))))))...)).)))))))))))))))).)))))))))))))....))))..))..



SIMILARITIES
miRBase tae-MIR1122: 2e-16

PMRD tae-miR1122: 2e-16

microPC miR1436: 2e-31
UniProt no hits

RFAM MIR1122: 1e-45
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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