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Species belonging to selected taxon:

Nasonia vitripennis, Nasonia giraulti, Bombus terrestris, Solenopsis invicta, Apis mellifera



ABOUT THIS RECORD

ID: MNEST035383
species: Apis mellifera
miRNA family: mir-279
source: miRBase, original name: ame-mir-279 (MI0005734)

Taxonomy by NCBI:
Apis mellifera Apis Apini Apinae Apidae Apoidea Aculeata Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACTAGATCCACACTCATTAA

miRNA*
AATGAGTGAAGGTCTAGTGCACA

mismatches: 4
bulges: 1

View larger
pre-miRNA
AGAAAATGAAAAAATTTCCTGAATTTGCCAAATGAGTGAAGGTCTAGTGCACAGAAAATGAAATTGTGACTAGATCCACACTCATTAAGTACGTTCAGGT


dot-bracket secondary structure
.................(((((((.(((..((((((((..((((((((.(((((.........)))))))))))))..))))))))..))).))))))).



SIMILARITIES
miRBase nvi-mir-279: 0.00000000002

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-279: 2e-42

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR

references

[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"




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