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Species belonging to selected taxon:
Nasonia vitripennis
,
Nasonia giraulti
,
Bombus terrestris
,
Solenopsis invicta
,
Apis mellifera
ABOUT THIS RECORD
ID:
MNEST037569
species:
Nasonia giraulti
miRNA family:
mir-1
source:
miRBase, original name:
ngi-mir-1
(
MI0016626
)
Taxonomy by NCBI:
Nasonia giraulti
Nasonia
Pteromalinae
Pteromalidae
Chalcidoidea
Chaldicoidea group
Apocrita
Hymenoptera
Endopterygota
Neoptera
Pterygota
Dicondylia
Insecta
Hexapoda
Pancrustacea
Mandibulata
Arthropoda
Panarthropoda
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGAATGTAAAGAAGTATGGAG
miRNA*
CCGTGCTTCCTTACTTCCCATA
mismatches:
4
bulges:
0
View larger
pre-miRNA
CTGTT
CCGTGCTTCCTTACTTCCCATA
GTGCACGTGACGTA
TGGAATGTAAAGAAGTATGGAG
CCGCGC
dot-bracket secondary structure
..(((
(((((((((.((((...(((((
((.......)).))
)))...)))).)))))))))))
).....
SIMILARITIES
miRBase
nvi-mir-1
:
1e-33
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-1: 2e-32
Identical with:
nvi-mir-1
from miRBase (
MNEST037630
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Sathyamurthy G, Swamy NR,
Int J Insect Sci. 2:1-13(2010).
,
"Computational Identification and Characterization of Putative miRNAs in Nasonia Species"