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Species belonging to selected taxon:

Nasonia vitripennis, Nasonia giraulti, Bombus terrestris, Solenopsis invicta, Apis mellifera



ABOUT THIS RECORD

ID: MNEST037572
species: Nasonia giraulti
miRNA family: mir-2
source: miRBase, original name: ngi-mir-13a (MI0016637)

Taxonomy by NCBI:
Nasonia giraulti Nasonia Pteromalinae Pteromalidae Chalcidoidea Chaldicoidea group Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATCACAGCCATTTTGATGAG

miRNA*
CATCAAATTGGTTGTGGAATG

mismatches: 4
bulges: 0

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pre-miRNA
CTTTTGCGGTCCGATACATCAAATTGGTTGTGGAATGTCTCGTCTTTCCATATCACAGCCATTTTGATGAGCTTGGCCCGTAGAA

dot-bracket secondary structure
..(((((((.((((..(((((((.(((((((((.(((...........))).))))))))).)))))))...)))).))))))).


SIMILARITIES
miRBase nvi-mir-13a: 4e-43

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-2: 0.00000000000002

Identical with: nvi-mir-13a from miRBase (MNEST037639)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Sathyamurthy G, Swamy NR, Int J Insect Sci. 2:1-13(2010)., "Computational Identification and Characterization of Putative miRNAs in Nasonia Species"




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