miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Nasonia vitripennis
,
Nasonia giraulti
,
Bombus terrestris
,
Solenopsis invicta
,
Apis mellifera
ABOUT THIS RECORD
ID:
MNEST037576
species:
Nasonia giraulti
miRNA family:
mir-34
source:
miRBase, original name:
ngi-mir-34
(
MI0016631
)
Taxonomy by NCBI:
Nasonia giraulti
Nasonia
Pteromalinae
Pteromalidae
Chalcidoidea
Chaldicoidea group
Apocrita
Hymenoptera
Endopterygota
Neoptera
Pterygota
Dicondylia
Insecta
Hexapoda
Pancrustacea
Mandibulata
Arthropoda
Panarthropoda
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGCAGTGTGGTTAGCTGGTTG
miRNA*
ACCGCTATCGGCACTGCAAT
mismatches:
3
bulges:
1
View larger
pre-miRNA
GGCGTGTT
GGCAGTGTGGTTAGCTGGTTG
TGTAGATTATAGAAAGCACG
ACCGCTATCGGCACTGCAAT
TATGACGGTCG
dot-bracket secondary structure
(((.((((
.(((((((.(.((((.(((((
(((............)))))
))))))).).)))))))...
...))))))).
SIMILARITIES
miRBase
nlo-mir-34
:
4e-40
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-449: 4e-34
Identical with:
nlo-mir-34
from miRBase (
MNEST037608
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Sathyamurthy G, Swamy NR,
Int J Insect Sci. 2:1-13(2010).
,
"Computational Identification and Characterization of Putative miRNAs in Nasonia Species"