ABOUT THIS RECORDspecies: Nasonia giraulti
miRNA family: mir-216
source: miRBase, original name: ngi-mir-283 (MI0016633)
Taxonomy by NCBI:
Nasonia giraulti Nasonia Pteromalinae Pteromalidae Chalcidoidea Chaldicoidea group Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAATATCAGCTGGTAATTCT miRNA* GATTCTTGCTGGTATCCGG mismatches: 3 bulges: 1 |
pre-miRNA
GTAGTCAAATATCAGCTGGTAATTCTGGGATACTTATTATGCAGCCCAGGATTCTTGCTGGTATCCGGTTACGAACTGG
dot-bracket secondary structure
(((..(..((((((((.((.(((((((((...(.......)...))))))))))).))))))))..)..))).......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Sathyamurthy G, Swamy NR, Int J Insect Sci. 2:1-13(2010)., "Computational Identification and Characterization of Putative miRNAs in Nasonia Species"
GTAGTCAAATATCAGCTGGTAATTCTGGGATACTTATTATGCAGCCCAGGATTCTTGCTGGTATCCGGTTACGAACTGG
dot-bracket secondary structure
(((..(..((((((((.((.(((((((((...(.......)...))))))))))).))))))))..)..))).......
SIMILARITIES| miRBase nvi-mir-283: 1e-39 PMRD no hits microPC no hits | UniProt no hits RFAM mir-283: 2e-38 |
Identical with: nvi-mir-283 from miRBase (MNEST037665) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Sathyamurthy G, Swamy NR, Int J Insect Sci. 2:1-13(2010)., "Computational Identification and Characterization of Putative miRNAs in Nasonia Species"
