ABOUT THIS RECORDspecies: Anolis carolinensis
miRNA family: mir-1
source: miRNEST
Taxonomy by NCBI:
Anolis carolinensis Anolis Polychrotinae Iguanidae Iguania Squamata Lepidosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAATGTAAAGAAGTATGTA miRNA* CATACTTCTTTATGTACCCATA mismatches: 2 bulges: 1 |
pre-miRNA
CTATTAAACCTGTTGAGAGCACATACTTCTTTATGTACCCATATGAGATACAATGTATGGAATGTAAAGAAGTATGTATTTTTGATAGGTACAAAC
dot-bracket secondary structure
.......((((((((((((.((((((((((((((((..((((((..........)))))).)))))))))))))))).))))))))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTATTAAACCTGTTGAGAGCACATACTTCTTTATGTACCCATATGAGATACAATGTATGGAATGTAAAGAAGTATGTATTTTTGATAGGTACAAAC
dot-bracket secondary structure
.......((((((((((((.((((((((((((((((..((((((..........)))))).)))))))))))))))).))))))))))))......
SIMILARITIES| miRBase gga-mir-1a-2: 9e-23 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1: 2e-27 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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