ABOUT THIS RECORDspecies: Anolis carolinensis
miRNA family: mir-29
source: miRNEST
Taxonomy by NCBI:
Anolis carolinensis Anolis Polychrotinae Iguanidae Iguania Squamata Lepidosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCACCATTTGAAATCAGT miRNA* TGGTTTCACATGGTGGCTTAGA mismatches: 1 bulges: 2 |
pre-miRNA
TCCTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTCTAGGA
dot-bracket secondary structure
((((..(((.((((((((((.((((((..((((((..............)))))))))))).)))))))))).))).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCCTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTCTAGGA
dot-bracket secondary structure
((((..(((.((((((((((.((((((..((((((..............)))))))))))).)))))))))).))).))))
SIMILARITIES| miRBase eca-mir-29b-2: 1e-36 PMRD no hits microPC no hits | UniProt no hits RFAM mir-29: 6e-27 | most similar mature miRNAs |
Identical with: cfa-mir-29b-2 from miRBase (MNEST026650) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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