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Species belonging to selected taxon:
Lactuca sativa
ABOUT THIS RECORD
ID:
MNEST001336
species:
Lactuca sativa
miRNA family:
MIR414
source:
miRNEST
Taxonomy by NCBI:
Lactuca sativa
Lactuca
Lactucinae
Cichorieae
Cichorioideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCATGTTCATCATCATCGTCT
miRNA*
TGATGATGATGATGATGATG
mismatches:
3
bulges:
0
View larger
pre-miRNA
CAACTTCCATTTCTCAATTTCAACTTATTCTACTTCTACA
TCATGTTCATCATCATCGTCT
TCCTTTAGTTTCTTTAGCTTTAGACCCTTCAATAAGCGG
TTTCATTTCATTAACCCACCTCGTTCTTCCCTCAAACAAACCAAAAAACAGCAACGAACCCTTCAAACTAATGCCCCACCACCACAAAGCAGCATCAGAA
GACTCTTGAACTTGAACGATAATCCTAAAGACGATGGTGGTGGCGGAAA
TGATGATGATGATGATGATG
ATGATCAGAACGAGACTGCGATTAAGGGGAC
AATTTT
dot-bracket secondary structure
.....(((....((.((((.((.(((.((((...((..((
((((..(((((((((((((.(
(((...((((.....))))..((((((((....))).))
)))((((.............(((((((......................)).)))))............))))..(((((((((.....(((..((((..
.....))))..)))....................))))))))).)))))
))))))))))))..))))))
..))..)))).)))..)).)))).)).))).
......
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
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