miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Antirrhinum majus, Fraxinus excelsior, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Ocimum basilicum, Salvia miltiorrhiza, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor



ABOUT THIS RECORD

ID: MNEST001575
species: Mimulus guttatus var. nasutus
miRNA family: MIRf1449
source: miRNEST

Taxonomy by NCBI:
Mimulus guttatus var. nasutus Mimulus guttatus subsp. guttatus Mimulus guttatus Mimulus Phrymaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GCTGGAGGATTCGACGGTGCT

miRNA*
CGTTGTCGTACGCTCTGGCTG

mismatches: 4
bulges: 0

View larger
pre-miRNA
AATGTCTCCCTGCTGGAGGATTCGACGGTGCTGCTCTGGCTGGGGCTGCGGATATTGGTGAAGAAACCATTGGCTTTGTTGATGTCCGTATCGGGCGGAG
GAAAATTCGTCTTGGCCTTGGAGCCGCGGAATCGGCGGGCGGCGTTGTCGTACGCTCTGGCTGCCTCCTCC


dot-bracket secondary structure
...........(((((((....((((((((((((((..(((((..((((((.((..(((.((((...(((((((...)))))))(((((.....))))).
((....)).)))).))).))...))))))..)))))))))))))))))))....)))))))..........



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q9FE67|ERF80_ARATH: 0.000008

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





Liczniki na strone;