miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Antirrhinum majus, Fraxinus excelsior, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Ocimum basilicum, Salvia miltiorrhiza, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor



ABOUT THIS RECORD

ID: MNEST001577
species: Mimulus guttatus var. nasutus
miRNA family: MIRf1372
source: miRNEST

Taxonomy by NCBI:
Mimulus guttatus var. nasutus Mimulus guttatus subsp. guttatus Mimulus guttatus Mimulus Phrymaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GCGAGCTTCTCGAAGATGTCG

miRNA*
GCATGTTTAGCAAGCTCGCCG

mismatches: 2
bulges: 2

View larger
pre-miRNA
CCCTCAGAAACAGCATGTTTAGCAAGCTCGCCGGGCAAGACCAACCGGACGGCGGTCTGAATCTCCCGGGAAGTGATGGTGGGCTTCTTATTGATCCTGG
CCAATCGGGAAGATTCTCCGGCGAGCTTCTCGAAGATGTCGTTAATGAAG


dot-bracket secondary structure
...(((..(((.((((.(((((.((((((((((((..(((((..((....)).)))))(((((((((((.......((((.((..((.....))..)).)
))).))))).)))))))))))))))))))).))).)))).)))..)))..



SIMILARITIES
miRBase no hits

PMRD osa-miRf10144-akr: 0.000000002

microPC no hits
UniProt sp|O65818|H2B2_SOLLC: 6e-19

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





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