miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Antirrhinum majus, Fraxinus excelsior, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Ocimum basilicum, Salvia miltiorrhiza, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor



ABOUT THIS RECORD

ID: MNEST002683
species: Striga hermonthica
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Striga hermonthica Striga Buchnereae Orobanchaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATCTTCATCTTCATCGTGG

miRNA*
ACATGGTATGAAGCTGAGC

mismatches: 3
bulges: 2

View larger
pre-miRNA
GATCTTCATCTTCATCTTCATCGTGGCCTAAACCTAGGGTTTGCTCCAATTCCTTCCTATCTTTAATCCCAATTCCTAAACGTATCTATAATCCGGAGTG
AACATATATGCAGCCGCCGAACGTAATCCTGCCGCCGCCGCCGCCGCCGTTTGCTATATAATATCGTTTCTTTCGCGAATCGATTCATGATTTGGGAATT
ATCAGTTATGATTATCCCCGTCGAATTTCAATTCTCATCGTCACATGGTATGAAGCTGAGCTA


dot-bracket secondary structure
....((((.((((((..((((.(((.((((....))))(((((((((..........(((.((((...........)))).)))..........))))))
))).(((((((((.((.((...........((.((....)).)))).)).)))).)))))..((((.(((......))).))))..(((((.((((.((.
((((....)))).)).))))..((((....))))..)))))))))))).)))))).))))...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





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