miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001055
species: Hordeum vulgare
miRNA family: MIR1436
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTATTTTGGGACGGAGGGAGT

miRNA*
TCCCTCCGTTCCAAAATAACT

mismatches: 0
bulges: 0

View larger
pre-miRNA
CACTAAATTATACTCCCTCCGTTCCAAAATAACTGTCTCAACTTTATACTATATCTAGTATAAATTTATACTAAGCTTAGGACAGTTATTTTGGGACGGA
GGGAGT
ACTAGAAAAT


dot-bracket secondary structure
..........((((((((((((((((((((((((((((.((.(((((((((....)))))))))((((...)))).)).)))))))))))))))))))))
))))))
).........



SIMILARITIES
miRBase far-MIR1122: 0.000006

PMRD hpr-miR1120: 0.0000000004

microPC miR1439: 2e-27
UniProt no hits

RFAM MIR1122: 3e-42
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record





Liczniki na strone;