miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001589
species: Musa ABB Group
miRNA family: MIR160
source: miRNEST

Taxonomy by NCBI:
Musa ABB Group Musa x paradisiaca Eumusa Musa Musaceae Zingiberales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCTGGCTCCCTGCATGCCA

miRNA*
 GCGTGTGAGGAGCCAAGCATA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 AAGAAGAGGTGAAATGGACTGTGCCTGGCTCCCTGCATGCCACTCGTATCGACGCCAATCATACCCATGGATTGGCAACTGCGGCTGGCGTGTGAGGAGC
CAAGCATACCTCTCACTCTCTCTCTC

dot-bracket secondary structure
.(((((((((((...((..(((((.(((((((.(((((((((.(((((.....(((((((.........)))))))...))))).))))))))).)))))
)).)))))))..)))).)))).))).


SIMILARITIES
miRBase rco-MIR160b: 0.0000004

PMRD ptc-miR160h: 0.000006

microPC miR160: 0.000002		UniProt no hits

RFAM mir-160: 0.000007		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;