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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042558
species: Sorghum bicolor
miRNA family: MIR172
source: miRBase, original name: sbi-MIR172b (MI0001501)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGAATCTTGATGATGCTGCA

miRNA*
TGGCATCATCAAGATTCACA

mismatches: 4
bulges: 0

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pre-miRNA
GCGTGGCATCATCAAGATTCACACACTGCTTGCAAATGCATACATGCATCTCTGCCGCCTTCTTTGCCTGCCATTAATAGCAGTTTTACTACATGTTTTA
GCTGCTGCTGCATCATATATGCCTCTGTGAATATATATGTGTATGTGTGGGAATCTTGATGATGCTGCAT


dot-bracket secondary structure
..(..(((((((((((((((.(((((.((..(((((((((....)))))..............))))..))......((((((((..((.....))...)
))))))).((((.((((((((..........)))))))))))).))))).)))))))))))))))..)..



SIMILARITIES
miRBase zma-MIR172e: 6e-16

PMRD sbi-miR172b: 2e-93

microPC miR172: 0.000009
UniProt no hits

RFAM mir-172: 3e-92

Identical with: sbi-miR172b from PMRD (MNEST054464)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA, PLoS Biol. 3:e13(2005)., "Sorghum genome sequencing by methylation filtration"




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