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Species belonging to selected taxon:

Linum usitatissimum



ABOUT THIS RECORD

ID: MNEST001401
species: Linum usitatissimum
miRNA family: MIR838
source: miRNEST

Taxonomy by NCBI:
Linum usitatissimum Linum Linaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTTCTTCTTCTTCTTGCTGC

miRNA*
GGCTAGGAACAAGGACGAAAAA

mismatches: 4
bulges: 1

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pre-miRNA
TCCTTTTTTCTCTTTTTCCTCTTTTCTTCTTCTTCTTGCTGCCCCTCCGGCAACTACAGTGGCGTCGTCGTTGCTCCTCCCCATTCTTTTCTCTTCTTTT
ACTTTCTTTGATTCTTCTTTTTTTTCTCTTTTCCCTCTCCTCATCTCCTCTCTATTCCCTCGCTTCTCACAGCGACGGCTACGGCGCCGTCCCCGCCTTC
ACTCTCTACTTCTTTCCTCACAGCGACAGCGGCGGAAAGCCGTCGCCTCCCTCACCGGCAACGAAAAAGAGGAAAAGAGGGAAGGGGAGACGGTGACCCC
ACCGCCGACGACGCGGCCATCGGCCGGAGAGGAGACAGACGGCGAGAGGAAGAGCAAGGGTAATGAAATTAGCCGCTGACTTGCTCGGGAAATTAAGGCT
AGGAACAAGGACGAAAAA
ACGGAGCTCGACGAAGGT


dot-bracket secondary structure
.(((((.((((((.(((....((((.(((((.((((((((.....((((((((...(((((((....(((((((.(((......................
........((.(((((((((((.((.(((.((.(((((((...((((((((....((((((..(((((..((.((.(((.(((((....(((((((..((
........................))..)))).)))..))))).))))).))...((....)).....)))))...)))))))))))))).((((....)
)))(((((...........))))).))))))).)).))).)).))))))))))))))))))))))).....)))))))..)))).)))).......))).
))))).))))).))))))
).))))...)).))))).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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