miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Lotus japonicus



ABOUT THIS RECORD

ID: MNEST001421
species: Lotus japonicus
miRNA family: MIR2109
source: miRNEST

Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGCGGGTGTCTTCGCCTCTGA

miRNA*
AGAGACGTGACTCCCGCTAC

mismatches: 3
bulges: 1

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pre-miRNA
TTTGGTCGCGAGTAAAATTGTAGCGGGTGTCTTCGCCTCTGAACCTTTGCCTATTGTGCTGTTAACCATTCTCAGCCTGGCTTCAGAGACGTGACTCCCG
CTAC
GCATTTGCTCGCCATCTC


dot-bracket secondary structure
...(((.(((((((((..(((((((((.(((..((.(((((((.....(((......((((..((...))..))))..)))))))))).)).))).))))
))))
)..))))))))).)))..



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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