miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Lotus japonicus



ABOUT THIS RECORD

ID: MNEST001434
species: Lotus japonicus
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCTC

miRNA*
 TTGGAATGTGGTTTGATCCGAAA

mismatches: 3
bulges: 0
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pre-miRNA
 GCTTGTAATTGAAGACGGAAAGGGTGGTGTTTGGAATGTGGTTTGATCCGAAATCATTGTCTCTGCCCCATTTTTAACTTTGCTTGTTTTCAAAGAGAGT
GAAAGAGAGATCATATAGGAAAAAGGGTGTTTGGAATTAATGAGGTTTGATCCAAGATCATAACATCATCTCTTCCTTTTTCCTTGATTTCTGATTTATT
TTCATATACCTATCTCATCACTTCATGCATGGGATATTGAGACTGATCTCGGACCAGGCTTCATTCCTCACCCCTACCTTTCCCTTGTATAGAAGCA

dot-bracket secondary structure
((((.((..((..((.(((((((..((((...((((((.((((((.(((((.(((...(((((...((((..........(((.((........((((((
(((((((((((((...(((((((((((.....(((....((((.((((((((...))))).))).)))).))))))))))))))))))))))......))
))))).......)))).......)).))))))).....))))).))).))))).)))))).)))))).))))....))))))).)).)))).)))).


SIMILARITIES
miRBase mtr-MIR166f: 0.000000000001

PMRD mtr-miR166c: 0.00000000002

microPC miR166: 0.000000004		UniProt no hits

RFAM mir-166: 3e-16		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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