miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Lottia gigantea



ABOUT THIS RECORD

ID: MNEST038847
species: Lottia gigantea
miRNA family: mir-1
source: miRBase, original name: lgi-mir-1 (MI0010100)

Taxonomy by NCBI:
Lottia gigantea Lottia Lottiidae Acmaeioidea Nacellina Docoglossa Eogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAATGTAAAGAAGTATGTAT

miRNA*
ACATACTTCCTTGCTATCCCATA

mismatches: 4
bulges: 1

View larger
pre-miRNA
GTATCTGTATGCAGACAACATACTTCCTTGCTATCCCATATTTTATATAATGCTATGGAATGTAAAGAAGTATGTATTTTGTGTATGGTTTT

dot-bracket secondary structure
....(((((((((((..(((((((((.((((.((.(((((.............))))).)))))).)))))))))..)))))))))))....


SIMILARITIES
miRBase xtr-mir-1a-1: 0.00000000002

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-1: 0.0000000003

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




Liczniki na strone;