miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Lotus japonicus



ABOUT THIS RECORD

ID: MNEST001423
species: Lotus japonicus
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGCCGGATCAATATCACTC

miRNA*
GTGGTATTGCTTCTGCTCATC

mismatches: 4
bulges: 0

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pre-miRNA
AAGTAGACAAGTGTGGTATTGCTTCTGCTCATCTTAATTATTGAATAAACTATATATATTATGGCTTAAGATGAGCCGGATCAATATCACTCCCGTACAT
G


dot-bracket secondary structure
..(((.......(((((((((.(((.(((((((((((.((.((.(((.....))).)).))....))))))))))).))).))))))))).....)))..
.



SIMILARITIES
miRBase no hits

PMRD no hits

microPC miR171: 5e-40
UniProt no hits

RFAM MIR171_2: 0.0003
most similar mature miRNAs

Identical with: miR171 from microPC (MNEST045188)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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