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Species belonging to selected taxon:

Macaca fascicularis, Macaca nemestrina, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST028168
species: Macaca nemestrina
miRNA family: mir-9
source: miRBase, original name: mne-mir-9 (MI0002572)

Taxonomy by NCBI:
Macaca nemestrina Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTTGGTTATCTAGCTGTATGA

miRNA*
ATAAAGCTAGATAACCGAAAGTA

mismatches: 3
bulges: 0

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pre-miRNA
GGAAGCGAGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAACTCCTTCA

dot-bracket secondary structure
.((((.(((((.(((..(((((((((((((((.((((((..(....)..)))))).)))))))))))))))..))).))))))))).


SIMILARITIES
miRBase age-mir-9: 3e-44

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-9: 2e-17

Identical with: mml-mir-9-2 from miRBase (MNEST027646)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"




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