miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST001405
species: Linum usitatissimum
miRNA family: MIR162
source: miRNEST

Taxonomy by NCBI:
Linum usitatissimum Linum Linaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCA

miRNA*
GAGGCAGCGGTTCATCGATC

mismatches: 3
bulges: 0

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pre-miRNA
GTTGTGAAGAGGGAGGGAACACACGGAGTTTGGAGGCAGCGGTTCATCGATCTCTTCATGGTTTATGTGGGTTCATCCGATCACAAAAACACGTGAATCG
ATCGATAAACCTCTGCATCCAGCAACCCCCCTAGTTTCTCCCTTCCTACC


dot-bracket secondary structure
...(((..((((((((((......((.(((((((.((((.((((.(((((((..((((((((((.(((((..((....))))))).)))).))))))..)
)))))).)))).)))).))))..)))))......))))))))))..))).



SIMILARITIES
miRBase csi-MIR162: 0.0000000005

PMRD rco-miR162: 0.0000000005

microPC miR162: 0.00000000003
UniProt no hits

RFAM MIR162_2: 0.000000009
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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